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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71066142, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPNNSDKKN GHSGQESMNT NQTRTTFKEY NQVPSDYNGT VYTCPMHPEV RDVEKSDCPI  60
   61 CGMFLKPEGE VADEDSHSHC HGKDTDRTKV KSVKGGKYDK VPVGYSGTVY TCPMHPEVRD 120
  121 VENSGCPICG MALESETATI GEEDTSELDD MTRRFWICTV LTIPLFLYAM SDMVGINLDN 180
  181 LGQGSISGQI AQWIQLALAT PVVLWGAAPF FVRGWQSIKS RNLNMFTLIA VGVGAAFGFS 240
  241 LVATFLPDIF PDSFRDATGQ VGVYYEAAAV IVTLVLLGQV LELKARSQTS GAIRALLELA 300
  301 PPTARRVDEN DVETEVSLDE VISGDRLRVK PGEKLPVDGT VLDGSSSIDE SMVTGEPIPV 360
  361 LKAQGDTVTG GTVNGTGTLL IEAVDVGEDT VLSKIVKMVA EAQRSRAPIQ RLADKVAGWF 420
  421 VPIVMLCSVV TFIVWAMFGP VPAMAYALVN AIAVLIIACP CALGLATPMS IMVGTGKGAQ 480
  481 HGVLIKNAEA LESMEKVDTI VVDKTGTLTA GKPELTAIEA LGSIDEDELF VLVAAVESAS 540
  541 EHPLAEAIVK AAKEKSLDIA KASDFSSTTG EGAQALVNGK QVAVGNSKFM QRLDSFDSSL 600
  601 SERADKRRKD GETVMFVAVD GRAAGLISVA DPIKPSTSEA ISLLHKAGLR VVMLTGDNEI 660
  661 TARAVASKLN IDEVHADVSP EDKNRIIKEL QSSGQIVAMA GDGINDAPAL AQANVGIAMG 720
  721 TGTDVAMESA GITLLKGDLM GIVRAHKLSR STMRNIKQNL FFAFIYNALG IPLAAGVLYP 780
  781 VFGLLLSPMI AAAAMSFSSV SVIGNALRLR RLKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle