YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62862218, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.89
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	80	0.94
Transmembrane Helix	81	101	0.86
Cytoplasmic	102	150	0.70
Transmembrane Helix	151	174	0.82
Non-Cytoplasmic	175	246	0.76
Transmembrane Helix	247	265	0.78
Cytoplasmic	266	273	0.82
Transmembrane Helix	274	295	0.90
Non-Cytoplasmic	296	302	0.63
Transmembrane Helix	303	323	0.86
Cytoplasmic	324	338	0.78
Transmembrane Helix	339	362	0.87
Non-Cytoplasmic	363	382	0.87
Transmembrane Helix	383	403	0.92
Cytoplasmic	404	409	0.82
Transmembrane Helix	410	433	0.83
Non-Cytoplasmic	434	440	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKTATFWRC LFFTLCGSFL TVTQAKATSN ASSFLEVSLR YFDEQLLLDI LPRAQCPGED  60
   61 EGSPMDEFAD LFTVDQLRQG WVVLHVFAAV YFFILLAIIC NDYFLPTVEC ICEDLHLSKD 120
  121 VAAATFMATA TSMPEFFTNT ISTLILESDM GLGTIIGSLM FNTLGVAGLA ALAIDKPPEN 180
  181 SAKAQLPLKK DPLSGDGLFV LNLPENTSSM SSTANLTRNK HLNDEDDVAD VVPGSIYAYP 240
  241 RDASGWMQFW WIFVFPIKVT LSLLIPHPMK YRRLYPLSFI MCILCIGGNA YLIVWMLTAF 300
  301 GVAIHVPTIV MGLTFLAAGS TMPEAVSSLI SLRNGENGIG VSNSLGANSL AILLSLGVPW 360
  361 FIKNCIHYGT GEPQQVGTQG IEYNILILII STMALFIILS FSGYRLTKRV GVALFTVYGV 420
  421 FIVLQILIEM NVFFPRDCSS