YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG2893-PD, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.61
Transmembrane Helix	8	29	0.74
Non-Cytoplasmic	30	37	0.50
Transmembrane Helix	38	62	0.85
Cytoplasmic	63	68	0.51
Transmembrane Helix	69	88	0.60
Non-Cytoplasmic	89	93	0.66
Transmembrane Helix	94	113	0.74
Cytoplasmic	114	200	0.87
Transmembrane Helix	201	221	0.58
Non-Cytoplasmic	222	259	0.82
Transmembrane Helix	260	280	0.78
Cytoplasmic	281	291	0.92
Transmembrane Helix	292	316	0.88
Non-Cytoplasmic	317	326	0.88
Transmembrane Helix	327	349	0.90
Cytoplasmic	350	360	0.81
Transmembrane Helix	361	381	0.85
Non-Cytoplasmic	382	397	0.81
Transmembrane Helix	398	418	0.92
Cytoplasmic	419	428	0.87
Transmembrane Helix	429	449	0.89
Non-Cytoplasmic	450	463	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDVAGATF MAAATSAPEL FVNVIGTFIT EGDIGVGTIV GSAVFNILAV AACCGIGAGM  60
   61 TIPLDWWPLT RDSIAYGVTV AILICVMHDE RVEWYEALIL VSLYAVYLAV MYFDKTFQKC 120
  121 AKGGVKQARS RSRSSNCSIH TKNSNEKEPE LVENRICQNM ANIQLNGGLN KEQAKATSTS 180
  181 GAGTTAISIT TSTMTTTLST THSAGGGGGA VGLCSGPGAI VQMAPLDDAE AESHVAVAAA 240
  241 DEGRKEEGYS LLSYPKDKSC FAQFTWLIIW PIHLLFRIAI PDCKKAKNNK IFPLTFIMCI 300
  301 VWIGSLSYVV AWMITIIGDT LKIPDSVMGI TFLAAGTSVP EAVSSVIVAK RGHGSMGICN 360
  361 SIGSNTFDIL LCLGVPWLIK AVFFPIQPGQ NYVAINSAGL EYSAITLLST LFLLYLTFST 420
  421 NKFKLDKKVG TACLVMYLVF MVFASLIELN VFFRVNLPTC GRS