YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG2893-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.74
Transmembrane Helix	28	47	0.88
Non-Cytoplasmic	48	68	0.66
Transmembrane Helix	69	92	0.70
Cytoplasmic	93	98	0.52
Transmembrane Helix	99	125	0.83
Non-Cytoplasmic	126	156	0.47
Transmembrane Helix	157	176	0.71
Cytoplasmic	177	263	0.85
Transmembrane Helix	264	284	0.58
Non-Cytoplasmic	285	322	0.82
Transmembrane Helix	323	343	0.78
Cytoplasmic	344	354	0.92
Transmembrane Helix	355	379	0.88
Non-Cytoplasmic	380	389	0.88
Transmembrane Helix	390	412	0.90
Cytoplasmic	413	423	0.81
Transmembrane Helix	424	444	0.85
Non-Cytoplasmic	445	460	0.81
Transmembrane Helix	461	481	0.92
Cytoplasmic	482	491	0.87
Transmembrane Helix	492	512	0.89
Non-Cytoplasmic	513	526	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYINCTQPA IDDFPRDLFS EAQRQSGAVV LHVIASLYLF VALAVVCDEY FVPAVEKICA  60
   61 ALNMSNDVAG ATFMAAATSA PELFVNVIGT FITEGDIGVG TIVGSAVFNI LAVAACCGIG 120
  121 AGMTIPLDWW PLTRDSIAYG VTVAILICVM HDERVEWYEA LILVSLYAVY LAVMYFDKTF 180
  181 QKCAKGGVKQ ARSRSRSSNC SIHTKNSNEK EPELVENRIC QNMANIQLNG GLNKEQAKAT 240
  241 STSGAGTTAI SITTSTMTTT LSTTHSAGGG GGAVGLCSGP GAIVQMAPLD DAEAESHVAV 300
  301 AAADEGRKEE GYSLLSYPKD KSCFAQFTWL IIWPIHLLFR IAIPDCKKAK NNKIFPLTFI 360
  361 MCIVWIGSLS YVVAWMITII GDTLKIPDSV MGITFLAAGT SVPEAVSSVI VAKRGHGSMG 420
  421 ICNSIGSNTF DILLCLGVPW LIKAVFFPIQ PGQNYVAINS AGLEYSAITL LSTLFLLYLT 480
  481 FSTNKFKLDK KVGTACLVMY LVFMVFASLI ELNVFFRVNL PTCGRS