YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG2893-PE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.79
Transmembrane Helix	37	56	0.88
Non-Cytoplasmic	57	78	0.68
Transmembrane Helix	79	101	0.71
Cytoplasmic	102	107	0.54
Transmembrane Helix	108	134	0.83
Non-Cytoplasmic	135	165	0.48
Transmembrane Helix	166	185	0.71
Cytoplasmic	186	272	0.85
Transmembrane Helix	273	293	0.57
Non-Cytoplasmic	294	331	0.82
Transmembrane Helix	332	352	0.78
Cytoplasmic	353	363	0.92
Transmembrane Helix	364	388	0.88
Non-Cytoplasmic	389	398	0.88
Transmembrane Helix	399	421	0.90
Cytoplasmic	422	432	0.81
Transmembrane Helix	433	453	0.85
Non-Cytoplasmic	454	469	0.81
Transmembrane Helix	470	490	0.92
Cytoplasmic	491	500	0.87
Transmembrane Helix	501	521	0.89
Non-Cytoplasmic	522	535	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDYWGLSST TDINCTQPAI DDFPRDLFSE AQRQSGAVVL HVIASLYLFV ALAVVCDEYF  60
   61 VPAVEKICAA LNMSNDVAGA TFMAAATSAP ELFVNVIGTF ITEGDIGVGT IVGSAVFNIL 120
  121 AVAACCGIGA GMTIPLDWWP LTRDSIAYGV TVAILICVMH DERVEWYEAL ILVSLYAVYL 180
  181 AVMYFDKTFQ KCAKGGVKQA RSRSRSSNCS IHTKNSNEKE PELVENRICQ NMANIQLNGG 240
  241 LNKEQAKATS TSGAGTTAIS ITTSTMTTTL STTHSAGGGG GAVGLCSGPG AIVQMAPLDD 300
  301 AEAESHVAVA AADEGRKEEG YSLLSYPKDK SCFAQFTWLI IWPIHLLFRI AIPDCKKAKN 360
  361 NKIFPLTFIM CIVWIGSLSY VVAWMITIIG DTLKIPDSVM GITFLAAGTS VPEAVSSVIV 420
  421 AKRGHGSMGI CNSIGSNTFD ILLCLGVPWL IKAVFFPIQP GQNYVAINSA GLEYSAITLL 480
  481 STLFLLYLTF STNKFKLDKK VGTACLVMYL VFMVFASLIE LNVFFRVNLP TCGRS