YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18150993, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLSARNSGQ NVGTNDKQTW RTWLKDKANA TLKQVLSQKT PSHKAMMRDD WMAKATKFAV  60
   61 LGSFISFAIL PEIANAAMDF SGLKNLAKDV VSFLIFDIGY YLGIAAIAFC GFQAKSGRMS 120
  121 WGQFGWAVAG VFLVFFSPNL VDTIKTGAQT ALK

Type	Start	End	Confidence
Cytoplasmic	1	54	0.96
Transmembrane Helix	55	74	0.90
Non-Cytoplasmic	75	92	0.78
Transmembrane Helix	93	112	0.94
Cytoplasmic	113	121	0.75
Transmembrane Helix	122	141	0.87
Non-Cytoplasmic	142	153	0.83