YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74318686, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.67
Transmembrane Helix	7	28	0.78
Non-Cytoplasmic	29	30	0.49
Transmembrane Helix	31	49	0.76
Cytoplasmic	50	60	0.78
Transmembrane Helix	61	84	0.89
Non-Cytoplasmic	85	147	0.82
Transmembrane Helix	148	170	0.93
Cytoplasmic	171	205	0.68
Transmembrane Helix	206	230	0.76
Non-Cytoplasmic	231	237	0.47
Transmembrane Helix	238	263	0.84
Cytoplasmic	264	269	0.50
Transmembrane Helix	270	290	0.74
Non-Cytoplasmic	291	305	0.69
Transmembrane Helix	306	335	0.81
Cytoplasmic	336	350	0.70
Transmembrane Helix	351	369	0.61
Non-Cytoplasmic	370	665	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTIRPLNIP WLALGATLLV AGLLIYLLGP ILTPFLAGAL LAYIFDPLVD RLEARRIPRA  60
   61 AGTAIVIVLA GLILFGLLLV ALPLFQGQFA ELSQRVPAGL DLLQTRFLPW VERTFGIAVS 120
  121 PHLDGLKAWL TEKATQQGAN WLPRLQTGAL AIIGALVNLL LIPVVMFYLL KDWDVIVGRV 180
  181 AALAPRPWLP AARRIGSAMN AVVGEFLRGQ LAVMITLSVY YSVALWAVGL DYALPIGVLT 240
  241 GVLSFVPFLG FGLGMVLALL VALLQYPDWV GVAWVAGVYL AGQALESYVV TPRLVGERVG 300
  301 LHPVAVIFAL AAFGQLFGFV GVLLAVPLAA TLLVGLRELR AVYQASSFYR GGYNPGFSGS 360
  361 AMPAMSAPLS GQPLFESHIA SLPLIHRGKV RDIYAVGDDK LLIVTTDRLS AFDVVMPTPI 420
  421 PGKGEVLTRV SAFWFDKLRA VVPNQTLAIA PEAVVAEDEK DQVAGRAIVV QKLKALPIEA 480
  481 IVRGYLVGSG WKEYQRSQSV CGIALPAGLM QADRLPEPIF TPSTKAALGA HDENIAFEQM 540
  541 AERIGAELAA QVRDVSLALY QAAAEYARTR GIIIADTKFE FGLDAAGQLM WIDEALTPDS 600
  601 SRFWPADQYR PGSNPPSFDK QFVRDWLEAS GWNKQAPGPA LPADIVARTS EKYREAMVRL 660
  661 LGDAI