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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50082961
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVSKTTQQ DVSSQEVLQV LQEMRSRLEA VNKAKTEPIA IVGMACRFPG GANDPSTYWR  60
   61 LLHDGIDAIT PVPPHRWDVN AHYEPNPEIP GKAYTKQGGF IEQVDQFDPL FFGISPREAI 120
  121 SLDPQYRLLL EVTWEALENA GQTWTNLKNS KTSVFMGVST DDYASLSNPI LINNRSLGVG 180
  181 RISHLLGLQG SNIQLDTACS SSLVAIHLAC QSLRSGESNL ALVGGVNLIL SPISTIGRCT 240
  241 MKALSPDGRC KTFDAAANGY GQAEGCGVVV LKRLSDAITD GDLISALIRG SAINHDGPSS 300
  301 GLTVPNGMAQ KQVIQQALSN ARLEPHQVSY LEAHGTGTAL GDPIEIEALA AIYGKNRPVD 360
  361 QPLVVGSVKT NIGHLEAAAG VSALIKVVLA LQHQEIPPHL HLKQPNPYVD WDKLPIKIPT 420
  421 SLMPWNCEAK PRIAGISSFG ISGTNAHLLL EEVPELIKGQ KAKGKSENDL ERPLHILTLS 480
  481 TKTEKALEEL VSRYQNHWET YPELAISDVC YTANTGRAQF NHRLAVIASG SEELTQKLRQ 540
  541 HTAGEEVVGV FSGKVPNSGS ESKVAFLFTG QGSQYLNMGR QLYETQPTFR QALDTCDHIL 600
  601 RPYLDNPLLE ILYPQDAQKS NDSPLDQTGY TQPALFSIEY ALLKLWESWG IKPNVVMGHS 660
  661 VGEYVAATVA GVFSLEDGLK LIAARGRLMQ GLPAGGEMVS VMASESKVLE TLKAMSLEDK 720
  721 VAIAAINGPE SIVISGEAEA IRAMATHLES VGIKTKQLQV SHAFHSPLME PMLAEFEAVA 780
  781 NQITYHQPRI PIISNVTGTK ADKSIATAQY WVNHVRQPVR FAQGMATLHQ QGYETFLEIG 840
  841 AKPILLGMGK QCLSPDVGVW LPSLRHGVDE WQQILSSLGQ LYVQGAKVDW SGFDRDYSRE 900
  901 KVVLPTYPFQ RERYWVETSI NQQQVVCSGE PNLQGTPEGT STTIVKLLSQ GNTKELAEKV 960
  961 EKTSDLPPEQ LKLLPDLLAS LSQQHQQELA RLTTKKWFYK VQWISQAIKP QRNKSNNQVC1020
 1021 HWLILTDSKG LGKSLATHLQ QLGNECSVVY QADNYQNYEP GIYHINPSHP QEFEQVYQTI1080
 1081 FENGKLPLQK VIHLWSLDTA SEQDLTTETL EQAQLWGCGS TLHLLQTLVK NPNSTPPKLW1140
 1141 MITRGTQPVL SPTEKLTVAT SPLWGLGRTI ASEHPQLWGG LVDLDPQGSE DEVEVLLQQI1200
 1201 IDSQKEDHLA VRNRKIYVAR LLKHIPQESQ PLSLRSDATY LITGGLGALG LKTAAWMAEK1260
 1261 GARNLVLISR RQPSEQAQQT IQSLEELGTQ VKVLSADISV ESDVANILEQ IQTSLPPLLG1320
 1321 VIHAAGVLDD GLLQQTNWER FTKVMAPKVN GTWNLHKLTQ HLSLDFFVCF SSMSSLLGSP1380
 1381 GQGNYAAANA FMDAVVHYRR EMGLPGLSIN WGGWSEGGMA TRLASQHQNR MQTAGISLIS1440
 1441 PEQGIQVLEE LVRTQSTAQV GVLPVDWSVL AKQFSSANPS SLLLELLQQE TSSEKTDERI1500
 1501 LEKLQAAPIT ERQDILKNYI QLVVAKTLGI NPSKISTDDN FVELGMDSLM GMEVVNKLSG1560
 1561 DLDFIIYPRE FYERPTIDSL TQYLSAELSE DNLATQPSPT SLEIFATKSS PSGNSARPAS1620
 1621 VSSRLPGIIF ILSSPRSGST LLRVMLAGHS SLFSPPELHL LPFNTMKERQ EQLNLSYLGE1680
 1681 GLQKTFMEVK NLDATASQAL IKDLESQNLS IQQVYGMLQE NIAPRLLVDK SPTYAMEPTI1740
 1741 LERGEALFAN SKYIYLVRHP YSVIESFVRM RMQKLVGLGE ENPYRVAEQV WAKSNQNILN1800
 1801 FLSQLEPERQ HQIRYEDLVK KPQQVLSQLC DFLNVPFEPE LLQPYQGDRM TGGVHQKSLS1860
 1861 ISDPNFLKHN TIDESLADKW KTIQLPYPLK SETQRIASQL SYELPNLVTT PTNQQPQVST1920
 1921 TPSTEQPIME EKFLEFGGNQ ICLCSWGSPE HPVVLCIHGI LEQGLAWQEV ALPLAAQGYR1980
 1981 VVAPDLFGHG RSSHLEMVTS YSSLTFLAQI DRVIQELPDQ PLLLVGHSMG AMLATAIIGN2040
 2041 GPLTLDRLRT EAARIRPFRQ RRRLPTYRSR RRAWCAPCRV RKFNVAKTSN VAPCHICSWN2100
 2101 GRSGCRGGRC AGCGPGPVAA AASTADLVGI SIRQKDGRGR GGDNRLC

YRC Informatics Platform - Version 3.0
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