YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47606560
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYHIEYASN ESGKSEKEAF VQNSFSQTNG KGRKGLLVVL SVSAICLLAG SAFYFTRTGK  60
   61 ESDGPLYGNA LDESSSDDFI ITTLLKSPGG KKFIVSKLTE LVASYDKDGN SQEEKHSGEL 120
  121 TTTEERSEKG EEHYKKRFGN LKISKKSEIN FADAKFLMTN LESVNSFYLF VKEYGRKYKT 180
  181 EEEMQQRYLA FVENLEKIKA HNSRENVLYR KGMNQFGDLS FGEFKKKYLT LKSFDFKTFG 240
  241 GKLKRITNYE DLIDKYKPKD ATFDHASYDW RLHKGVTPVK DQANCGSCWA FSTVGVVESQ 300
  301 YAIRKNQLVS ISEQQMVDCS TQNTGCYGGF IPLAFEDMIE MGGLCSSEDY PYVADIPEMC 360
  361 KFDICEQKYK INNFLEIPED KFKEAIRFLG PLSVSIAVSD DFAFYRGGIF DGECGEAPNH 420
  421 AVILVGFGAE DAYDFDTKTM KKRYYYIVKN SWGVSWGEKG FIRLETDING YRKPCSLGTE 480
  481 ALVALVD

Type	Start	End	Confidence
Cytoplasmic	1	34	0.92
Transmembrane Helix	35	55	0.89
Non-Cytoplasmic	56	487	0.99