YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49122482, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	486	0.50
Transmembrane Helix	487	508	0.81
Non-Cytoplasmic	509	520	0.53
Transmembrane Helix	521	543	0.87
Cytoplasmic	544	598	0.63
Transmembrane Helix	599	621	0.92
Non-Cytoplasmic	622	629	0.82
Transmembrane Helix	630	654	0.86
Cytoplasmic	655	735	0.88
Transmembrane Helix	736	757	0.88
Non-Cytoplasmic	758	1158	0.91
Transmembrane Helix	1159	1179	0.92
Cytoplasmic	1180	1191	0.71
Transmembrane Helix	1192	1210	0.94
Non-Cytoplasmic	1211	1239	0.81
Transmembrane Helix	1240	1262	0.87
Cytoplasmic	1263	1279	0.78
Transmembrane Helix	1280	1301	0.93
Non-Cytoplasmic	1302	1314	0.70
Transmembrane Helix	1315	1338	0.83
Cytoplasmic	1339	1345	0.61
Transmembrane Helix	1346	1364	0.76
Non-Cytoplasmic	1365	1432	0.92
Transmembrane Helix	1433	1454	0.91
Cytoplasmic	1455	1462	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPITDSRPK AVDRDSTATS CNSTLDENQI ENDREVTNLA RVLSERSKHS HHQLPFNFGK  60
   61 DPSLDPQNAQ FNARAWAKAF YNVRYSSTDA PPPRVAGVAF KNLNVAGYGS PVDYQMSVGN 120
  121 ALLKLPTLAW QWLGGKKQRT EILQDVDGLL LPGEQLCVLG PPGSGCSTLL KTIAQETHGF 180
  181 EVDPSSYVNY QGITPKQMSK KFRGEAIYTA EVDAHFPQLV VGDTLYFAAL ARTPRHVPGG 240
  241 MSREEYAVHL RDVIMSTFGI SHTINTKVGN DFVRGVSGGE RKRVTIAEAA LSYAPLQCWD 300
  301 NSTRGLDSAN AVEFCKTLRT QGDVFGITSC VAIYQAPQAA YELFDKVTVL YEGRQIYFGP 360
  361 AKEAKDYFIR LGFVCPEAQT TPDFLTSMSS PVERVIRPGF ENLVPRTADD FAQRWKESPE 420
  421 RQALLRDIDR YNTEHPFNAT DLDLFSSSRD AEKSKNQRPK SPYTLSYWGQ IRICLWRDFQ 480
  481 RLKNDPSVTL AMLILNFFEA LIISSVFYNL PGNTSSFFSR GALLFMMVLL SAFSSVLEII 540
  541 TLYEKRTIVE KHSRYALYHP SAEAISSMIM DMPYKIVNSL LNSLVLYFMG NLRREAGAFF 600
  601 FLYLISFAMM MGMSMFFRFF ASLTKSIEQA LAPSSIILLA LVLYTGFAIP VSYMRGWASW 660
  661 IRWLNPVSYG FEAVMVNEFN GREFPCVSFV PSGPGYENVS PQERVCSTVG AVPGSDVVQG 720
  721 ADFVRSSYGY EYSHRWRNFG IIVALTVFLT MCHLVTSELV SSQRSKGEVL VFRRGKAQKM 780
  781 REKRHHTDEE QIAAPAAQNE KVIQEEPGLV SGVEQQSSIF HWEDVTYDIK IKGETRRILD 840
  841 RVDGWIRPGT LTALMGVSGA GKTTLLDVLA SRTTIGVVGG NMLVDGRSRD ESFQRKTGYV 900
  901 QQQDLHLHTS TVREALKFSA LLRQPPQYSR AERLAYVETV IDLLNMREYA DAIVGVPGEG 960
  961 LNVEQRKRLT IGVELAARPK LLLFLDEPTS GLDSQTSWSI CNLMETLTKN GQAILCTIHQ1020
 1021 PSAMLFQRFD RLLLLAKGGK TVYFGEVGQG ARTLMDYFVR NGGSACPPGA NPAEHMLEVI1080
 1081 GAAPGAQTDI DWPEVWRSSP EYQQVRSELA RLRELANRPS PVSDPNDKSS YAEFAAPFSE1140
 1141 QLLQVGRRVF QQYWRSPSYI YSKALLTVGC SLFIGFSFFK ADNTRQGLQN QMFGVFVFLF1200
 1201 VVVQLVMQVI PSFVTQRTLY ESRERQSKTY AWQAFVLSNI IVEFVWNTIM AIFCYLVWFY1260
 1261 PVGLYQNARY TDTIHSRSTL TLLIIWAVFL FASSFAHMLI AGVDSAEMAS ALSNIFFIMM1320
 1321 YAFCGILAGP NALPGFWIFM YRVNPLTYLV SSLLSATLGD APMHCANNEV LTFFAPPGLT1380
 1381 CREYMEDYRS VNGGYLLNPD AQGSDQCQFC SLEYTNQYLS SLSIDFNNRW RDFGLLWVYV1440
 1441 IVNTVGAIVF YKLFRVPRAK KD