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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40747412, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPGRIRSPN HKKQNSDFRV SVARGFAYVV DTGRMDPRVL FPKRNRLYRA ARLAWSVLQF  60
   61 HGNWLREHWR TRDIISPREL ADRSLKTRHF SIPVVAPLMD IMAAFNGFLV ISFRLLSFCP 120
  121 VTELTFAPHV RRPAIEANQH QKHTVSSNAV RRGVAPFASA TSASANNDGV SAGFVQDIEL 180
  181 VEYPVPRTTG LQGNLPQKRS LRGEKTSPQT DRNPLGHSHQ RPETGPFGSD KPVKLRYWVE 240
  241 ALRRRSANLK DREATSKMKF SHSIQFNAVP DWSAYYIAYS NLKKLIYTLE QQAHRSNEQA 300
  301 TDAESAPLLN DTQNPDKLFQ HALDVELDKI CAFYRSKERE IYEDVDNVMK DAEEYTAKAD 360
  361 GAEMNPMQDS MHKGRRVSTG SIQDHSAEFG LGRRQSMGSE PAADDDEDSD DEHPTTRPTL 420
  421 GQSRSAYPGP PDDNRTEDMR SSIWTDSRYA PNSQAVVRRG NQNEHLTDPA LLDLYNSAAS 480
  481 LKKRIIAVYV ALCGLKSYVQ LNKTGFSKAL KKYDKIIDRN LRREYINSSV SPAYPFLSST 540
  541 MENIEGFIRQ IETLYAELTT NGDLSLARRE LRLHLREHVV WERNTVWREM IGIERKAQAA 600
  601 NVGLRQTLLG GDADPALARR QGDEQVAQSK QLRTPFGVIS APTWLWSANF ATLIVVLVVF 660
  661 SVLLSVPIME KPEQQNCLAM LVFVSLLWAT EVIPLFVTSL FIPFLVVLLG IMKSDEKPYK 720
  721 RLGPKEATSV AFGAMWTPVI MLLLGGFTIA AALSKYDIAR RMALFVLSKA GSNHRIVLLT 780
  781 NMFVSMFLSM WISNVASPVL CYSIIQPLLR NLSPDSSFAK ALVLGIALAA NVGGAASPIA 840
  841 SPQNIIALQN MYPSISWGTW FFISLPVCII SILLIWVLLL VTFQPGRDTT IVPIRPLKDK 900
  901 FTGIQYFISI VTLTTIGLWC ASHQLEHIFG DMGVIAIIPI VLFFGTGILN KEDFNNFLWT 960
  961 IIILAAGGLC LGKAVTSSGL LHTIAEDIRS RVEHFSLYGV LIVFSALILV IATFISHTVA1020
 1021 ALIILPLVRQ IGLSMDDPHP NLLVMASALM CSVAMALPTS GFPNMTAIMT EVPQTGQRYL1080
 1081 QVRHFFTRGI PASLMSFVVI VTLGYGLMRV AGL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle