YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45358745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.92
Transmembrane Helix	16	36	0.92
Non-Cytoplasmic	37	69	0.87
Transmembrane Helix	70	91	0.94
Cytoplasmic	92	100	0.83
Transmembrane Helix	101	123	0.88
Non-Cytoplasmic	124	135	0.78
Transmembrane Helix	136	156	0.95
Cytoplasmic	157	165	0.80
Transmembrane Helix	166	188	0.93
Non-Cytoplasmic	189	208	0.88
Transmembrane Helix	209	228	0.90
Cytoplasmic	229	258	0.84
Transmembrane Helix	259	286	0.82
Non-Cytoplasmic	287	293	0.78
Transmembrane Helix	294	315	0.86
Cytoplasmic	316	322	0.66
Transmembrane Helix	323	343	0.94
Non-Cytoplasmic	344	348	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSVNTYKK YTLKKLIFGF VLIIALIIIS IYSLCTGDFQ LSISQIINSL LGSGDASSNL  60
   61 VIWNIRLPRI FAAILCGIGL SVSGAVMQCV LRNPLASPYT MGISHGAMFG ACVAIITLGI 120
  121 GGAESTGHIA INNPYSITIF AFLGSLLGVC AVLILAKLKG LSPEAMVLAG VAISSLFTAA 180
  181 TTLIQYFADD MQLAAMVYWS FGDLGRPLWP EVKIMAFVAF VSLIYFIHKR WDYNALESGE 240
  241 ETAKSLGVNT DKIRLSGMLV ASLVTSVCVA FLGIIGFVGL ICPHIIRITV GGDYRYLIPL 300
  301 CSIFGAVLVL LADTIARTII SPIILPVGIL TSFLGAPMFL YLLTKMYK