YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67904542, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	30	0.82
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	458	0.99
Transmembrane Helix	459	474	0.46
Cytoplasmic	475	647	0.56
Transmembrane Helix	648	669	0.72
Non-Cytoplasmic	670	679	0.29
Transmembrane Helix	680	694	0.34
Cytoplasmic	695	703	0.75
Transmembrane Helix	704	725	0.85
Non-Cytoplasmic	726	729	0.72
Transmembrane Helix	730	751	0.91
Cytoplasmic	752	761	0.78
Transmembrane Helix	762	783	0.93
Non-Cytoplasmic	784	792	0.80
Transmembrane Helix	793	813	0.93
Cytoplasmic	814	833	0.89
Transmembrane Helix	834	856	0.91
Non-Cytoplasmic	857	864	0.82
Transmembrane Helix	865	887	0.90
Cytoplasmic	888	903	0.92
Transmembrane Helix	904	925	0.93
Non-Cytoplasmic	926	941	0.84
Transmembrane Helix	942	962	0.90
Cytoplasmic	963	970	0.74
Transmembrane Helix	971	992	0.91
Non-Cytoplasmic	993	998	0.80
Transmembrane Helix	999	1020	0.92
Cytoplasmic	1021	1030	0.77
Transmembrane Helix	1031	1051	0.88
Non-Cytoplasmic	1052	1105	0.91
Transmembrane Helix	1106	1127	0.88
Cytoplasmic	1128	1140	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTPTRKTD LRVIIVGGSV AGLTLAHCLA NANIDHIVLE KRAEISPQEG AFLGIWPNGG  60
   61 RIFDQLGVYA DLEKCTVPIH KMRVRFPDGV SFSSELPRQV QERFGYPIIS LDRQKVLEIL 120
  121 YNRYPAKSNI HVNKKVTEIR QTEREAQVLT ADGAVYKGDL VVGADGIHSA VRAEMWRQAK 180
  181 DLVGRRDRQD VNHEIAAFTV EYACVFGISS PISGLESGEH VNSYSNGLCV ITFHGKDGRV 240
  241 FWFILIKLQK RFIYPFTPRF SASDAAKICA EYANVPVWGD ICVRDLWGNK TSVSMTALEE 300
  301 GLLETWRFKR VVLLGDSIHK MTPNIGQGAN TAAEDAGVLA SLLQRLSTSD SSATSCTIDA 360
  361 VLQEYASLRY ERVKSTYQRA YFGARLHTRD DALKAFVGRY IFPRFRQQVL ERTSQAIAGA 420
  421 PQVDFLPTPK RTGPGWSDYA GSPEVGAPTL PWLVISLPVL ASILTSAQLL RLSLGMAIAV 480
  481 ILNRYPQQGI ISEAQMRILP VVTCDDQTLA SNKTSSNRDD FFKASNLGLT KARITPEVSA 540
  541 FRVTGSRSKR HTKFRLRRLQ QPPTESTTRL ASPDDAQPIE ETKSQEHLEQ SATQGLSEAS 600
  601 GDNNAGGAHP TPAPNEGDAP TVAELQHGSN DRVDDGTSGS GTVSGWKLAA VLIGLSLAVF 660
  661 CMSLDSTVLS TAIPKITAEF NSLHDMACFS LVYGKIYSLY RVKWVYLTTL FLFEAGSLVC 720
  721 GAAPSSLALI IGRAIAGVGG AGVFLGSMLI VHEIMPLHQV PLFIALISGL YGIASVVGPL 780
  781 LGGVFTDYVS WRWCFYINLP IGGLTAFIIV LFVRPRVREK ATVKKTPWAQ LLDLDPLGII 840
  841 LILPAVMCML LVLQWGGAKY AWSNWRIIVL LVMAGSLALT FTAVQLWQGE RATIPPRIVR 900
  901 NRSVWGAIAF SVCIYGSFTV FTYYLPIWFQ AIKSVSATRS GVMNLPMILG VVVCSMLSGW 960
  961 GVSRVGYYVP FMYMAPVVGS IGAGLLTTLH VFSGPAAWIT YQLLLGVGIG SGMALPLVAV1020
 1021 QTALPTDDVS TGSAIITFTQ SLSGALFNFV AQSVFQSRLV HNLNAALPGV DTARVADVSP1080
 1081 REIRNAIEPE YLPQTLEAYS LAITQVFYAG TALCTLALFG VLPIKCLSVK GSRIPPMAHA1140
 1141