YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49086564, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.99
Transmembrane Helix	32	55	0.91
Cytoplasmic	56	62	0.89
Transmembrane Helix	63	83	0.93
Non-Cytoplasmic	84	121	0.95
Transmembrane Helix	122	143	0.92
Cytoplasmic	144	151	0.78
Transmembrane Helix	152	172	0.89
Non-Cytoplasmic	173	185	0.82
Transmembrane Helix	186	207	0.89
Cytoplasmic	208	223	0.92
Transmembrane Helix	224	243	0.91
Non-Cytoplasmic	244	253	0.72
Transmembrane Helix	254	275	0.95
Cytoplasmic	276	282	0.92
Transmembrane Helix	283	302	0.93
Non-Cytoplasmic	303	308	0.71
Transmembrane Helix	309	328	0.93
Cytoplasmic	329	339	0.82
Transmembrane Helix	340	360	0.94
Non-Cytoplasmic	361	392	0.85
Transmembrane Helix	393	412	0.89
Cytoplasmic	413	478	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTYPVAYNG TGVNGGDSLR EDLNIYYSSG DIAWVITSTA LVLLMIPGVG FFYSGLARRK  60
   61 SALSLIWLSL MSIGVVSFQW FFWGYSLAFS HTAGKYIGNL DNFGFKGVLG APSVGSTKVP 120
  121 DLLFAVFQGM FAAITVALAV GAVAERGRML PCMVFVFIWS TIIYDPVACW TWNASGWVFQ 180
  181 LGGLDFAGGT PVHIVSGTTA LAYSLMLGKR RGHGTHELNY RPHNVTHVVI GTVFLWVGWF 240
  241 GFNAGSALSA NLRAVMAAVV TNLAASVGGV TWCLLDYRLE RKWSTVGFCS GVISGLVAIT 300
  301 PGSGFVTPWA AFIFGVVGAA ACNFATKVKY LIRVDDALDI FAVHGIGGLV GNLLTGLFAA 360
  361 DYIAHLDGST EIDGGWINHN YIQLGYQLAD SVTGMAYSFF GSCIILFIIN MIPGLSLRVP 420
  421 EEDEVLGIDD AEIGEFAYDY VELTRDVING TTEPMDGASK RSTTPTGPVE PSPAELKA