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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40747037, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHRGSLFFF IVILYFLLSS QSHPPLISQD REHQRELERE RQALRLLNES RYGDFDPRAD  60
   61 KWLPFIGARK NDSYDWGLLA DAQDRARYQL QSAFSNAGLV PPSGLEDGNS SRSLNLSQLA 120
  121 LPVYRNSTGT LRGDWVRRKL DTNRPSLNTT AIVLEHEYFT HEFGQNITGN SGEFYLNVHE 180
  181 GGGEELKLPQ GHVREIRATL SVETDDYWGH TWYISLYGVH FPETGGTVLT TTSEKFRGVF 240
  241 SLPHLTMTVD SYNISHQLLL KSLSDTIAEK QNRPPTLFPW SSLVGTDQVE FPSPKCEHIV 300
  301 YLQQHPVAIE GYLADQVVID QIEQELRFPM GAPIPSPPSM VMSGVVYSPD CGYILETKGA 360
  361 PDFPPTDGLY LQGPKVEEYA KYAARLVFLI SAVFIGQIML LMRQIKDAST PSTRSRISFY 420
  421 TIALMAYGDA FVLVFILLEL YPAVSFLVMT TLAFFAFLSV SYIGMKFMIE IWAIQAPERR 480
  481 EQERRSSPPA SSTRSSGLPL PATATGVRDS GATPIIILTP DQDPPAEEEE GTPTPNRSTV 540
  541 PTAQETRSDI GAMYARFYFV LFVMLVVSIW SFLWPNRLGA WYARALAFTY LSFWVPQIYR 600
  601 NVMRNCRKAL RWDFVIGQSC LRLVPFVYFL TVRENVLWVR PDTKTALCLA GWVWIQVWLL 660
  661 ASQDILGPRF FVPRGWAPPA YDYHPLLRDD PESGPDVQSD GGVLPITALR ADGRDSSDSK 720
  721 DDDRPRNKDR KKAIFDCAIC MQDIEVPVLA APGAAGGSSV ANGATSLLTR RNYMVTPCHH 780
  781 IFHSACLESW MKLRLQCPIC RESIPPV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle