YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67515787, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEYRAPQVE DGLETDDVTS TTKRKRSIET PELQEKDSKE LKSQRPRKAA KSGKPPEAED  60
   61 DEGYVDDEGE FGEGEIDEDM SEEGDKEGSE ENKEDEEREN GHKSQDKPQR SPNREKLEKT 120
  121 IERFGRGPLE GTAIEGKALS GSPDTILAML MDAMLKSKPM SHGLTDRTLK KLVEVGYHDI 180
  181 QKLRNASWEE RAMVLKDGGY NRYREQGSTN LGRLVEFVDE KYEGDLNNLI KKAGYDPTTT 240
  241 RQLIKEVHGL GDLGVELFFN NVQSVWPTIA PFVDSRSLKT AEDAGLGTDL NAIYESLGND 300
  301 SVRMCKLANA LSAASRFANV AVGVIMVLGG IAQFFPISLG HVITGVYVIL FGLIVAGLEF 360
  361 FPTIPDYVYR YASFLFSFLG RGVFYIFVGC LILHGHVLQY IAGSIVGFLG IGYAVLEFVP 420
  421 SIEPPSNMRE ADQSWGAEQV V

Type	Start	End	Confidence
Cytoplasmic	1	312	0.93
Transmembrane Helix	313	335	0.86
Non-Cytoplasmic	336	342	0.62
Transmembrane Helix	343	362	0.93
Cytoplasmic	363	370	0.73
Transmembrane Helix	371	393	0.85
Non-Cytoplasmic	394	399	0.59
Transmembrane Helix	400	419	0.90
Cytoplasmic	420	441	0.84