YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40746786, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARTRRQKA ALAAQTEGSD DVSSTSNGTI QRPPKQSRSA SPEDDGVTEN VYLFAPNIIG  60
   61 YVRVVLAIAS LYYMPLHPRT CSLLYSVSCL LDALDGYAAR YYNQSTTFGA VLDMVTDRCT 120
  121 TACLLVFLSS AWPRWALVFQ SLISLDMASH YMHMYATLSM GGANQSHKKI DSSRSWVLYL 180
  181 YYNSRTVLFI CCALNELFFI GLYLLSFSSP TLSSSLLQPP QGVTVGGTPP PPASTSVFAS 240
  241 PWSAGALELA RANKIDSFWP WVITAVSFPV MAFKQFVNVV QLVKASNWLV EGDLDNRRKA 300
  301 RKARDN

Type	Start	End	Confidence
Cytoplasmic	1	118	0.68
Transmembrane Helix	119	143	0.46
Non-Cytoplasmic	144	146	0.35
Transmembrane Helix	147	164	0.46
Cytoplasmic	165	185	0.58
Transmembrane Helix	186	207	0.90
Non-Cytoplasmic	208	306	0.54