YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40746633, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLHVPGSS TKALGLARFP QFPLSSRSLQ RPYTTVGGFS LPVALYDFGL LNGEVLVIAA  60
   61 FAFTAGLFYQ VSTKLLPIMN GPVPTDEETL TMYTPSDELS QEVEDHIKNH PLFVSLREDP 120
  121 SYVESRPYMK IPEKIRDRSL TAGTLSNSGG IVVPPTAFYN NDTNTLVTFF YLGSRVSGHP 180
  181 GIVHGGFLAT LLDEGMGRCA FPVLPNKVGV TANLNVDYRR PAMANSYFVM HAQVVKSEGR 240
  241 KAWVEARIET LPEEGQEPVV LVEAKSLFIE PKQAAAVFHR

Type	Start	End	Confidence
Cytoplasmic	1	47	0.41
Transmembrane Helix	48	69	0.68
Non-Cytoplasmic	70	280	0.52