YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40746544, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNFINRMLG RDGERHEGGN EGEHRAPDER TQLLPREREQ YLSPDDPALL DQVSPYNLWS  60
   61 VRALRGLSTA FLAVSFIWWT FLLVSLFVSA PALHTRGSGF FAFAYTTLTV GYILFGLLFF 120
  121 SVPSKPMTVW GFVLAIFLFI DMCITVAVPS IRVEEGWVGI ASVVWAFLMA LYNIIQNRYV 180
  181 AWGKREEEER LTGREETRWT LREWLAVLTE TLFMALIAII SILFMITLAL RARDATLHAP 240
  241 GQKYWVSAHN YQVHLDCVGN SSYSNSPSTV LLEAGEGPVE HTLQPFINEL YQKGAIPRYC 300
  301 YWDRPGMAWS DNAPSPFSAG MASDALSEAL ALAGEEGPFV LLSAGIGSIY SRIFASRHLL 360
  361 ETKGIFLIDP LHEDYLSDIA SPGRGFWLWI RGILSPLGLD RIAGAIFRHR TREDRVFGQS 420
  421 AYQTGKFIRA KLQENLVAGS MTSSEIQAAR HVQMADTPLI VVSSGDKVGN DKKWADKQED 480
  481 STAITKNLKN WDIVQDAPHE VWRTTEGRQL LEERLREMVS GE

Type	Start	End	Confidence
Cytoplasmic	1	68	0.96
Transmembrane Helix	69	90	0.89
Non-Cytoplasmic	91	100	0.72
Transmembrane Helix	101	120	0.97
Cytoplasmic	121	128	0.78
Transmembrane Helix	129	149	0.96
Non-Cytoplasmic	150	156	0.77
Transmembrane Helix	157	175	0.96
Cytoplasmic	176	203	0.92
Transmembrane Helix	204	229	0.85
Non-Cytoplasmic	230	522	0.86