YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1_EMENI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.58
Transmembrane Helix	21	41	0.84
Cytoplasmic	42	47	0.62
Transmembrane Helix	48	70	0.71
Non-Cytoplasmic	71	76	0.59
Transmembrane Helix	77	96	0.86
Cytoplasmic	97	126	0.93
Transmembrane Helix	127	150	0.84
Non-Cytoplasmic	151	163	0.86
Transmembrane Helix	164	185	0.89
Cytoplasmic	186	204	0.92
Transmembrane Helix	205	223	0.59
Non-Cytoplasmic	224	240	0.55
Transmembrane Helix	241	262	0.52
Cytoplasmic	263	304	0.74
Transmembrane Helix	305	327	0.78
Non-Cytoplasmic	328	363	0.78
Transmembrane Helix	364	386	0.80
Cytoplasmic	387	412	0.69
Transmembrane Helix	413	437	0.78
Non-Cytoplasmic	438	446	0.70
Transmembrane Helix	447	466	0.93
Cytoplasmic	467	474	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPDYKSRKE AFVSNLTGGS ILEINAVTLV APASVFLWSV LQSRLSFFTP YGPAALITDF  60
   61 LLNVLAILFA TTFYSSAPWL LNLLLVSPAF LILMNSRSRR TQTKAKPPQT ATAQHGPGAS 120
  121 LPIHPFLTTY RAAMMIITCI AILAVDFRVF PRRFAKAENW GTSLMDLGVG SFVFSGGVVS 180
  181 ARSVLKSRER GASPKKTLTQ RFTSSVRHSV PLLVLGLVRL YSVKNLDYAE HVTEYGVHWN 240
  241 FFFTLGFLPP FVELFEGIAT LIPSYEVLSL AVAVLYQVAL ESTDLKSYIL VSPRGPDLLS 300
  301 KNREGVFSFL GYLAIFLAGR ATGMRIIPGG ISPSNTPQQA RKRVLTRYGA NIPVSRRLAN 360
  361 MPYVLWVAAF NNAQLFLFCL IETILFPSVH RASGSGKNDE AKRTDFATSP ILTAFNRGGL 420
  421 AVFLVANLLT GAVNLTVPTL DVDKTRAMAI LVGYAALITG VALGLNKANI KISL