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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67517714, gi|...
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSTSSPTFP PLDPIVVDDD MVNPYRDTDM DFLDTARLQF SSENAGQDFD DLFSRASSSR  60
   61 TVAESNPPCL SPSELSLKRS YQDHEPLRHP EVFTSDSPAE SPEDSSRSSS SESPRNHLRN 120
  121 PSVASSTSAV HSENTVMPFG YTAEDWVNTD YDHVKDESLF GFDASLPNIE GPYSAETDLE 180
  181 SSNKAMDAAF DFESAASSPS PLKTGSISQS RVHKGSRSRL GGAPGSAKRK SASPRIPQTT 240
  241 APFISHISKD THSPFQASRM SQVKSPLSPW DGKSPSSYLE ESFGGFNMNG GSQPNPDINF 300
  301 STNSLPFGFG FVPPPAQKAL NPSPAHQPIL TVHPTSLKSR VETQIPIKLT LYPLPYGVKK 360
  361 LRLPSHTISK PKFLAPPATE RSADTVELHT SLFCTSALQD KEKLKKALAK ARGEPIYRSS 420
  421 SSSPMGSDEG PDDEKPLEGG EVKICAGCIQ RERKRAFRKK QRKPEEDELF QKHEDKRVIV 480
  481 FNTHEIKDWA EPSKTTSSSE GSVTIPGAMQ VELPMRIACY CRHQNEKIGF QVIFTLKDYK 540
  541 DNVIAQAITN SIMITDDHKT HAPSGPPAPG PPPALADGTE LPGVGVFPSG PALDAGKSPA 600
  601 STKQSTGSPS ATDLQGLQQR LNSQYQPSPS PFMDSTTAGP SSSSQASRSL SRQASPNDFQ 660
  661 GPMSKRRKHS NSSRLPSELT MTKLEPGQSS ARASSNEPQF PAPRGFASPS ERPFVTPAAM 720
  721 SNHLGNGPLT PTSGDSNPFL TSIQQQNLDN FIQQQLMSAP NSAQPSRPGT PSASGRNSFQ 780
  781 DQNLNIAIGP SPSTQIWPGI TNAGNRLPTV IHKLVPAEGS VTGGTEVTLL GSGFYPGMEV 840
  841 VFGDTLATTT TFWGDKCLNC LTPPALQPGQ VVVLFKHEHP SFNQLQSQSQ PLLPKQQQYF 900
  901 RYVDDRELQM YRLALGILGH KLGNQADAFQ TAQQIMGSDY KGAFNLQKDF QGSSGTQRQV 960
  961 PGLESQGKLG DMDSRMLTFL EFIDLDDNPR PPRYNMRCAT GQTLLHFASS LGLTRFVAGL1020
 1021 LARGADPDVQ DNVGNTAMHL AALNGHAHIV HRLRLAGSSP NARSIRGFTP ADLASTLPAH1080
 1081 QAALIPARHY RSRSVGSLAS RRRHSSSASL HSLWESSSAS GSFDYAVDDS EDIEDDDEPV1140
 1141 LTISRRSSVH HDVSVALQTA EQATSDGDAR AFSPPAALVA WRNQLQAQIN QFQQSVANAF1200
 1201 PNLPALPPMP ALPDYHAMRR ITNLVPHRPT SSRGAKEGWW DMLTGNSSPG ATELPSYDEL1260
 1261 YPRKEGEDEE EATRAKKTSM VQAAAEAALD QHFEAQAGSS RTTSEQKNED IKDIRIGRNV1320
 1321 ISREQQKHLR EQQARRMKGL ASDRNLYFIW IPLLLLVIFA WARSYIPGIS QGFSDAYDFL1380
 1381 KNRSTQRVLD IGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle