YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40746433, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQDVGEVRV QPPNASLHPD DALTEKSSVA EWSSSPLKHS PGGHISDNPP MEASRAESTD  60
   61 QTAGLPQITG DEVAENAGPS QAWGRKLRTL PAWIRSLEYP VDDIEATATS RLLPSQPNEA 120
  121 VVAQHNHSPY STSKPGLGAD RGHSMDGEPA RESRWKSFSK TIAYPREPGL EEKLVTPEWL 180
  181 HENHGNYALP WRGQLEPDED TEDPLKKKRR REMWFKRFHN TLLQSPIVPL VIRLTVWSFS 240
  241 LTALALGGSI QRLSSDFPRP QGPSALMAII VDAVALVYLV YITWDEYTAK PLGLRSPAAK 300
  301 ARLILLDIFF IVFDSANLSL AFESLSSAEG ACTYAEINQT LVPKNDNICR RQVALASVLL 360
  361 IALIAWLVTF SISVLR

Type	Start	End	Confidence
Cytoplasmic	1	217	0.91
Transmembrane Helix	218	241	0.72
Non-Cytoplasmic	242	263	0.74
Transmembrane Helix	264	284	0.92
Cytoplasmic	285	302	0.88
Transmembrane Helix	303	321	0.81
Non-Cytoplasmic	322	352	0.77
Transmembrane Helix	353	375	0.89
Cytoplasmic	376	376	0.83