YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40746217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHAFIRRPA LSPSPSRSSA PPQARLQSRR YESNTPTQRQ PDHATTPKSE LPAQSHISIP  60
   61 PTPPPVPARA APRSLRQIIQ AGPLGRMGRS YSRFQEKRPY TTQVCSSIVI YLCGDLSAQF 120
  121 FFPPENPPQR RMESQPEKDD NGGVAEKKGG YDPWRTMRHL TVGIGSSIPS YNWFMFLHNN 180
  181 FNFASKPLSI LTKVVVQQAV FTPVFNTYFF SVHSLLSGAS LEETWERLKV ALPRSIVNSA 240
  241 KFWPMVTAFS FMYVPPQFRN VFSGCIAVGW QTYLSWLNQK AARQVETALT EPAPSEEQVA 300
  301 VVIKA

Type	Start	End	Confidence
Cytoplasmic	1	103	0.57
Transmembrane Helix	104	118	0.22
Non-Cytoplasmic	119	305	0.64