YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49087062, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.82
Transmembrane Helix	6	24	0.86
Non-Cytoplasmic	25	31	0.74
Transmembrane Helix	32	52	0.91
Cytoplasmic	53	61	0.80
Transmembrane Helix	62	83	0.90
Non-Cytoplasmic	84	139	0.96
Transmembrane Helix	140	162	0.83
Cytoplasmic	163	172	0.84
Transmembrane Helix	173	193	0.95
Non-Cytoplasmic	194	205	0.76
Transmembrane Helix	206	225	0.95
Cytoplasmic	226	233	0.80
Transmembrane Helix	234	250	0.90
Non-Cytoplasmic	251	277	0.86
Transmembrane Helix	278	300	0.83
Cytoplasmic	301	308	0.71
Transmembrane Helix	309	332	0.83
Non-Cytoplasmic	333	353	0.83
Transmembrane Helix	354	374	0.86
Cytoplasmic	375	390	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLFRILSSA LFLTVTVSSI PLAFDVGGKT CGLAFSLSLA TFYFLFSVLK LATPKQSWFR  60
   61 SSLIVLISSL QWVIIPILLI WSLNRFSVDT DNSTSWVERT FSGKRAQDSS IQDWLFGRDG 120
  121 LLESVALGNW DKILRWSTPV FQLAEGFCSL LVIQAAGQIT RWLVNRGGRS DSWMIGLLVL 180
  181 SASVISSSVY FLWRVLQFPE ISNVDAALIG VTVTCAVILC AWGIGSGRGN PVESSLLFAY 240
  241 VVLCIYQIFT DYQPSHPVEQ PVQSPSQAGD FPPLPPIIMA SYTTLMHALS LLPSIIHAAF 300
  301 NMITAVFRFL SYFSPSILIS VYTSLLMQHF ATTSQAMGGS GQWWSTQGAG GGNLWRWINL 360
  361 AGTLALYAIE LWLGAADDLD SGLAGHWKTD