YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67516717, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNTTLLYD LPPLPAYQLT PRPSLVDGIP DNILALILPV VAYWAVSMFF HVIDVYDLFP  60
   61 QYRLHTPAEV LTRNRASRWD VVRDVVLQQV VQTLAGLILA YFDEQEYIGR EEYDVAVWAR 120
  121 RIRFVQRGLP YLLALFGLDA SGVAANFSRN GHKMLAGAVA GGYYPGATQS IVSSGGIETV 180
  181 VPAFTNWEMS LAAFIYWYFI PALQFTWGIC VVDTWQYFLH RAMHLNRWLY VHFHSRHHRL 240
  241 YVPYAYGALY NHPVEGLLLD TVGAGIGFLT SGMTHRQSMW FFTFSTIKTV DDHCGYAFPW 300
  301 DPLQHATTNN AAYHDIHHQS WGIKTNFSQP FFTFWDRLFN TQWKGEVKLR YERSREAAEK 360
  361 KLSEGGMQQD SDMENSSSDF AQPNGEAAVV SPEEPSDRDA RTRLRKKTAS FSPSVDSLKG 420
  421 VNHGVPSSVL

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.58
Transmembrane Helix	33	53	0.72
Cytoplasmic	54	127	0.79
Transmembrane Helix	128	148	0.84
Non-Cytoplasmic	149	165	0.70
Transmembrane Helix	166	185	0.48
Cytoplasmic	186	193	0.42
Transmembrane Helix	194	218	0.85
Non-Cytoplasmic	219	255	0.49
Transmembrane Helix	256	274	0.62
Cytoplasmic	275	430	0.76