YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67522987, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	167	0.99
Transmembrane Helix	168	190	0.62
Cytoplasmic	191	204	0.52
Transmembrane Helix	205	225	0.57
Non-Cytoplasmic	226	328	0.97
Transmembrane Helix	329	355	0.84
Cytoplasmic	356	381	0.96
Transmembrane Helix	382	404	0.90
Non-Cytoplasmic	405	411	0.86
Transmembrane Helix	412	431	0.96
Cytoplasmic	432	469	0.93
Transmembrane Helix	470	490	0.92
Non-Cytoplasmic	491	499	0.73
Transmembrane Helix	500	518	0.95
Cytoplasmic	519	527	0.78
Transmembrane Helix	528	548	0.93
Non-Cytoplasmic	549	562	0.75
Transmembrane Helix	563	588	0.86
Cytoplasmic	589	732	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSISVFLCF LVALIHTPLV AAERLIESKA LTLCQDSSNF TATYFHVRYT PNNNSLLIGF  60
   61 DGVSSISGYV EATIVLDAYG YTAVKQSFNP CDMDLEGLCP MNTGPMNIRD APITIGDDVA 120
  121 SQIPGIAYTV PDLDASVRVY INSTTTHESI ACLEASLSNG KTVYQKGVGW ATAIIAGLGL 180
  181 TASAITSGLG HSNTAAHVAA NALSLFSFYQ SQAMIGMTSI HLPPIVASWT QNFQWSMGII 240
  241 RVGFLQDICT WYQRSTGGTA ATLLSELSTI SVQPLKKRAF DAASGLVPRT VGALIKRSGA 300
  301 ESEKATSETV EVRGIDRVGF IAGIEETNIF LTGFIFFVVF VALVMLLVVA FKGACELLAK 360
  361 HGKMKSDKFL DFRNGWRVVA RGILFRLTLI GFPQMCILCL WEFTRNDSPA EIVLAVIMLL 420
  421 SLFAALGWAS FKVISLAKRS IALHKNPAYI LYSDPTCLNK WGFLYVQYRA TAYYFVIPVL 480
  481 GYLLVKGMFI GLSQPAPVVQ TVAYVIIEAA MLIAVSVLRP WMDKKTNIYN ISIAAVQFLN 540
  541 AIFLLFFSNV FNQPGLVTGV MGVVFFVINA VAALVLLILV LIGSIYAFAS KNPDTRYQPM 600
  601 RDDRGSFIKS QTQLTTELDA LGATARGDMK TTPYKANPFD DENGSFSSGN GASVSRQNLE 660
  661 PNPTGLPNQA PHSPVDPSLP LFPSDNSSAR GPGSSADTIQ RSQSPIPRSF TSSPYRTQNN 720
  721 QSPWQRGAGY DH