YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40745942, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSKAGRRR RSSSIIYQEP PESIEHTSDQ AALPNLNANW VNAKGAWTIH FVLIAALKIF  60
   61 YDILPGVSQE TSWTLTNISY MFGSFLMFHW VRGIPFEFNA GAYDNLNMWE QIDNGDQYTP 120
  121 AKKFLLCVPI CLFLLSTHYT HYDLTYFVIN FLATLGVVLP KLPFLYFT

Type	Start	End	Confidence
Cytoplasmic	1	45	0.54
Transmembrane Helix	46	64	0.77
Non-Cytoplasmic	65	72	0.37
Transmembrane Helix	73	93	0.82
Cytoplasmic	94	120	0.43
Transmembrane Helix	121	139	0.45
Non-Cytoplasmic	140	143	0.48
Transmembrane Helix	144	165	0.82
Cytoplasmic	166	168	0.54