YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67522787, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRFPITPSL RMTVRPPGPI APRPCISKST FRCSSRSALA SSKRTQPPRS FISYSRPVPR  60
   61 AFPQAHARSF SSSSHRHFYN GGNRYRRFDG PGRQPLIVHL LQKARPIHFV MVGGVIGGVY 120
  121 VYNTDTVEMT GRRRFNCVSH QQELKMGEQS YREVLRDCQG RILPEYHPLT IMVNRVLHRL 180
  181 VPMAPIDGAD WKVHVIKDDN MVNAFVLPGG KVFVFTGILP ICKDEDGLAA VLGHEIAHVV 240
  241 AHHTGERMSN NFVTMGVIFL AALLFDISGN IPSLLLNLMY SLPNSRTQEA EADNIGLMMM 300
  301 SKACFNPEAA VDFWARMQRA EKQAPPQFIS THPSNYNRME AIRGWLDKAQ AEYENSGCMG 360
  361 TGSWMPGFRK ASNDFW

Type	Start	End	Confidence
Non-Cytoplasmic	1	106	0.53
Transmembrane Helix	107	124	0.30
Cytoplasmic	125	251	0.54
Transmembrane Helix	252	271	0.65
Non-Cytoplasmic	272	376	0.73