YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67522453, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWWQTLFQL SLLSSVALPA AAAAASWGFT DATVSVQTKG AGVGAGFKEE IPRNGALSSP  60
   61 VSLGNADTLK VALTTQEGKS AKSAHQVFLM LQDPKTGLDI SYPFSVKGNG KSRVELTWKD 120
  121 LPVQFLSTSE PLDARILIGS FGSSAAYNKP AFQLSLARNP NEPVPTYEVS RYGQLPEIHH 180
  181 IFKSDPQSPP VAVTLLFIAI VLAIFPVLGG VWLYLGANIN HLPVALKSAP IPHAVFLGSL 240
  241 LAIEGIFFLY YTSWTLFQIL PAVAAAGTVA FISGSRALGE VQGRRLAGLR

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	191	0.99
Transmembrane Helix	192	215	0.93
Cytoplasmic	216	228	0.88
Transmembrane Helix	229	251	0.87
Non-Cytoplasmic	252	256	0.76
Transmembrane Helix	257	279	0.88
Cytoplasmic	280	290	0.97