YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49087286, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.93
Transmembrane Helix	43	62	0.64
Non-Cytoplasmic	63	93	0.63
Transmembrane Helix	94	115	0.73
Cytoplasmic	116	128	0.67
Transmembrane Helix	129	152	0.85
Non-Cytoplasmic	153	179	0.68
Transmembrane Helix	180	202	0.92
Cytoplasmic	203	212	0.91
Transmembrane Helix	213	232	0.85
Non-Cytoplasmic	233	233	0.47
Transmembrane Helix	234	253	0.70
Cytoplasmic	254	270	0.62
Transmembrane Helix	271	290	0.94
Non-Cytoplasmic	291	592	0.68
Transmembrane Helix	593	614	0.89
Cytoplasmic	615	634	0.86
Transmembrane Helix	635	653	0.95
Non-Cytoplasmic	654	664	0.73
Transmembrane Helix	665	685	0.87
Cytoplasmic	686	722	0.89
Transmembrane Helix	723	743	0.94
Non-Cytoplasmic	744	773	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSPSLRKR GGKREDTPVP SDRSFAPSAS QLGAASRSSE WDYRLAITIL TVLAFITRFY  60
   61 KISYPDQVVF DEVHFGKFAS YYLRRTYFFD VHPPFAKLLL AFTGWLVGYD GHFLFENIGD 120
  121 SYIDNKVPYV ALRAMPAVLG ALTIPVVFLI MWESGYSLPA CVLASGLVLF DNAHVGEDRL 180
  181 ILLDSTLVIT MALSILCYIR FYKLRHEPFG RKWWKWLLLT GVSLSCVIST KYVGVFTFVT 240
  241 IGSAVMVDLW NLLDIRRQGG ALTMFEWTKH FAARFFSLIV VPFFFYLFWF QVHFAILTHS 300
  301 GPGDDFMTPA FQETLSDNAM AAQSVSIEYF DTITMRHKDT KVFLHSHSDT YPLRYDDGRI 360
  361 SSQGQQVTGY PYNDTNNHWQ IIPTVPLDET DEKSRKVRNG DIVQLRHVAT DTILLTHDVA 420
  421 SPYYPTNQEF TTVSHELADG KRHNDTLFEI RVEHGKSKQE FRTLSSQFKL VHVPTKVAMW 480
  481 THTTPLPDWA YKQAEINGNK NVLQSSNIWY VEAIESLEED SPRLKKEERK VKHLPFWRKY 540
  541 IELQRAMFFH NNALTSSHPY ASEPFQWPFL LRGVSFWTKS DTREQIYFLG NPVGWWISSS 600
  601 LLAVFAGVIG ADQLSLRRGV DAVEEIWGPG SRSRLYNSTG FLFLCWAAHY FPFWLMGRQR 660
  661 FLHHYLPAHV ASALVTGALI EFIFNIQPIS VPATIPVAAD DPTGKGKTRR FVTARERMGV 720
  721 KSIVAGWIAS LTILAATIWG FWFFAPLTYG TPGLDVAQVN ARKWLGYDLH FAK