YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHE9_EMENI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSMPWLFRQ SLRTGLNLSR TSLPGRSPIS PAPISKVHSK TARRNFSVCL RCHFRYQPSL  60
   61 RSDEIKRSTD EKQDKKIEEP VIALGAPEST QAEPNAGAQD TSQTADTVHT QGQEGKKEDE 120
  121 PGSTQNGGLP SYIEDRRSQF SKQFTTWMDN LQSNVFVAGQ RLNDLTGYSS IEALKRNIQE 180
  181 QEKRLRAARH RVRTAKEAYA AAINRRSTSQ REVNELLQRK HAWSPADLER FTHLYRNDHT 240
  241 NEVAENETQE ALSAAERESE EAAASLTKSI LSRYHEEQVW SDKIRRMSTW GTWGLMGVNV 300
  301 LLFLIFQIAV EPWRRKRLVK GFEEKVLEAI EKEKILVHSQ PVPPVEFTAT QDAHSPTSGL 360
  361 VTPSPGDNIA SEESSEATVA ANTPTTTAED EASGSMAPEN ITSSSLESYK PPSLQSLLSS 420
  421 MSIECCRQYI HYLLSESPVT VTQRDISVVA ATSAAAGATL MGLVVALIRS Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	288	0.74
Transmembrane Helix	289	310	0.89
Cytoplasmic	311	445	0.68
Transmembrane Helix	446	468	0.81
Non-Cytoplasmic	469	471	0.56