YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40745169, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQIDLADDQ DERQRRLQEW DSDDDPGNPR NWSTLRKTLT TTVIGLIGFA TTVNASIYSS  60
   61 GHEQVKRDFN VSTTVSLLPL SAYSLGLAFG PMISSPLSET FGRKFVYLLT LPMVDLFTLG 120
  121 VGASQGIASL IVCRFVAGVF AAPGVSVAAA TITDYTPPSR RVIPLGIYYA IPTIGSSMGP 180
  181 LIGSFVVEQR GWRWTAWTPL IMAAVVHPPA IFIRESYKPI LLQRRAEKLG GEGVLPVQRQ 240
  241 TAMQLFKEFV TSTIVRPLHM LFTEPLVGFI CLYCGFQFAL LYTFIVASPR VFADVYGFSP 300
  301 SGQGLSFLGM VAGCICAPLV LFTVDRIVQL NPTLRIRNNN TEGGGSPPEL KLYTAMFGSL 360
  361 ILPTGLFLFA WTAKPHIHWM APIVAQSLTF LGSMLIYIPC NFYMLDVYGS KYGASASGAS 420
  421 SLTRYTLSTA FPLFVPQMYD ALGVDWATSL LGFLATVMAP IPWVFFYKGP GFRARSGINI 480
  481 YIIPRSLKLA KENVAKGQPF GPVHWGRISG LFAGHLRTQG IRTSPGPSSA RFGSVHSNHS 540
  541 YSYILSPICL PINKATLSEM TAPHRRKPIP QPHGRSHSHP TAISHPHPHS PAPAYTRPAQ 600
  601 PRAPQQMAYH PPQSLAHGTP APARSRSHYL PHPRSAPAQA RQLSHIQTTQ RHHGQQLKQH 660
  661 TTQISQHANT MKSQAKLNQS AQKENAQIAK SMQKQFAAQQ KTFNKHANAQ QRAFDKQSAA 720
  721 HQKHFEKQNA ALAAQYERDR AAMDHEMEQI RHADAQRQYE YEQYMWYKSQ AQVEQDRKDW 780
  781 DKTVAGVVAG AALGAAAGAA AGVAWEREQW EEQRLQAEAE RQEDSSELEP SDYEYESRNE 840
  841 GYQTQSLGYD NGNSGYNDSG YEQQQPYTSL DFMTQNRDGN DGDDDCCDGC CGGNGNDDDD 900
  901 CCC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle