YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67523459, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKATVAAIA AASAATGAGI TALFYSRPSP QQQKPATATP TTAPAPPTAP VAVPVPTQPA  60
   61 SPSLASKSAT ATGPVDPAGI YQYGFPGPIA DTITSLPLTG AYDRRTRNPS WVAEHITPAS 120
  121 LASKNADRKH STFFEDSTIP PLFRAKLADY FRSGYDRGHQ VPAADAKWSQ EAMDGTFALT 180
  181 NMCPQVGEGF NRDYWAHFEE FCRDLTKRYP SVRIITGPLY LPHRDADGKW RVNYEVIGTP 240
  241 PNVAVPTHFY KVVYAEEGPG LPSGKVALGA FVLPNARISN DKRLAEFEVP LEAVERASGL 300
  301 EFASKLEPTR RKRLCQEVRC DIVVREFNNA KKKA

Type	Start	End	Confidence
Signal Peptide	1	17	0.98
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	334	0.99