YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHO2_EMENI
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.24
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRGLSTGTN QSGAGLRERA VTSQADLNVI TENPTVTNAS NGKDKAGKTF GRTPDGTVFT  60
   61 VPQTHDMVSQ LLSPSEPKNL SDLVVLTILA GHIFLLWILP SGAKIPVFAV IYLFWRSCYN 120
  121 AGIGWLLHNQ SHHKTLVRWA EKSQIFVNPA TGKNPYPQLY HLIKRELEIK ISKDYSFEEA 180
  181 PLEYNTWLVF RRLVDLILMC DFASYCLFAI ACSRHPANES VLMTVIRWTS GIALVLFNLW 240
  241 VKLDAHRVVK DYAWYWGDFF YLIDQELTFD GVFEMAPHPM YSVGYAGYYG ISLMAASYKV 300
  301 LFISIIAHAA QFAFLVLVEN PHIDKTYNPP PPRKRTITEH DAASQRSQSP DTPNAPSVSE 360
  361 ENVPNATTFS SPPPAVHNLL GFHNLDLHRI TDTSSILVQF LMFSLTVLTP STPWYQFLFV 420
  421 ANAAIWRLWY SVGIGYLLNR QSNCKSWTRH FVKYGETPHE AWNQWKGTYH LSMVMCYASF 480
  481 ISAVWKMYTL PSNWGYGLAI LRHVLGAGLI SLQIWTSVSI YESLGEFGWF YGDFFFDESP 540
  541 KLTYNGIYRF LNNPERVLGL AGVWGAVLIT ASGTVAFLAF LSHILSLGFI QFVERPHMQK 600
  601 LYGRSLRQDA GLVKSLKRSL PPSLRQLHGS VDKIFDESYE FIEEIIDTAR PKLAAGVNTF 660
  661 VRDTTALFQK YPARVTISRI DADLAGYDLR DYSLTVEASQ LPLDEGDLSK EGDNARTPLD 720
  721 RRGDLENLGF PIRHTRRWVA VNEGFYDNLT CERGILISDV VVSTSQGDNG EKHDIATGEV 780
  781 VFSGDKLFWT QGVFEFRYHH NGKHNVMAIS RPFEVRIPRF EEEDHFDMSQ TAVETSLLPV 840
  841 IQNCFDRDPE IAPETPEEQY GSLVERDGKF AKRVVFAVHQ MFGVEFAPEV VRSDGNVRNL 900
  901 AWRICNAKRV LYVSRWRYDT N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle