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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40744942, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAVLPSPAD SRSCFSPDPV GRRPIAQRYY LEHPDDAMSK PLPQLYTSDY PSPITCSAAS  60
   61 SSPSSPNLAP NAQLTFPPTP AGSISSNDPG DQDELLLPLY DSASVSEESN EEPNASPDLL 120
  121 GTSSADSSFS TPQISAADDS LVDEEPSRHV DYLSHEWKEE DIWASWRYVV AHREVYENSV 180
  181 RLENASWRTW TKLRHNLGTI SPDSLNWLKD CDVTWLYGPL KTSRVRVQSM NVSPPPSCSE 240
  241 SPNTCPDRKS ILKKRTASET MLQRSLSQHT LLQHAGAILK AQEAGHSRNR TTDLSGFEPA 300
  301 ADVHLSGLAT HTATSGLGSP SERRHIHFNK EVLQCIAVEA KYEEEEYLEF GGESSWDDTF 360
  361 IVKPASSSGG STPRASSSGE NKTIAPLPST TLKYRSDTPE PQPSSIMGRW SWAKYIPGRR 420
  421 LYSSSIGRMR QPNSLGAASN TTKFVDDSSN SWFVDPADED EDEDAQSFYL ASLGFRPQDN 480
  481 EQPSNVDVIY DRVVDTVNTA KDIAHVIWNV GWRGLCVGIL SPEQAILGRV QPTFKVIFPT 540
  541 TIPTEIQRPA PESKSTYHQY RGLVHADYVQ GFLWHLPGIY WAYSTFVTLH SFARHSQLSH 600
  601 MGVFSSLLVT AYTNTSPLGL DWLMECHLSN YFLFSRGSLT LTVVGILTVY FFMRKDWAFS 660
  661 DNSGATTDWQ IKNVTNAPKY DNMTACAHLP GMDKVLVILK TGATEALDKI PVHLRTTLEC 720
  721 VQHYVIFSDF EEYIYGVHVQ DVLRSVSEGM KQTNSDFGIY NRLRASGRGG LTADDWRDDE 780
  781 NGPLGKQGNP GWKLDKWKFV PMIDEALLAS PWAHWYVFLE ADTYIVWRNM VRWLSQLDQR 840
  841 KALYLGAPMQ MGSQIFAYGG AGIVLSRTAM RLISQYRAQN FTVVEQMTAD DWAGDHVLGR 900
  901 ILGDIGVPLI WSWPLLVPSS IWEFEYFTKA YGRQPWCYPA VSFHHMSTQD IWDMWLLEQQ 960
  961 WFKYTTYSR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle