YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49087424, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.46
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVSPPKPW ERAGATAGTA LSSPATTSTA MSSTSTTSAA PTAGTSTTSA TAPPSLPSRP  60
   61 STLSTVANQN ASNYSPYGAS RFGASPYGGY GGYGSYSSPY SRFGGMGSMY GGYGGYGGMY 120
  121 SGMGGYGGMY GGGMPGDPND PNSLTNSFNQ STQATFQMIE SIVGAFGGFA QMLESTYMAT 180
  181 HSSFFAMVSV AEQFGNLRNT LGSALGIFTL IRWFKTLIAK ITGRPPPADA TALTPAAFAA 240
  241 FMGGRATLPD GSPAPPRPSR KPFLMFLVAL FGLPYLMGKL IKSLARSQEA QRQKIMMTAN 300
  301 GEQQGVLDPS KLDFCRVLYD YTPESQETNG IDLAVKKGDI VAVLSKSDPM GNASEWWRCR 360
  361 ARDGRVGYLP GPYLETIQRK PQQQALTSGS EAGSRSNTMQ SQTQVGNEVA AGQKPELKGK 420
  421 MGDISAESFQ KSAFYS

Type	Start	End	Confidence
Signal Peptide	1	32	0.48
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	157	0.58
Transmembrane Helix	158	178	0.52
Cytoplasmic	179	193	0.44
Transmembrane Helix	194	214	0.67
Non-Cytoplasmic	215	229	0.49
Transmembrane Helix	230	248	0.66
Cytoplasmic	249	261	0.51
Transmembrane Helix	262	281	0.86
Non-Cytoplasmic	282	436	0.59