YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49091232, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEGGVHQRR KSDAKGGDTP ELQPADMEDI LDSGSDYFSP PGSPTTRPRL SRSSLSYQDD  60
   61 WETFPPLDQL TVFDLLDNLS LSQRLERLQR SLNLQREKVK KQQEKLRSTS KNARDRVVGE 120
  121 LKRRVPTADE QLEKYRRRMK TGVERLSQRW NAASAVTLRE KISFIAGVLN IFISGYLLGS 180
  181 NPEYFYIWFS AQLAYFMPIR FYRYHSIGYH YFLADLCYFV NVLCMLSIWV FPQYKRLFIS 240
  241 TFCLTFGNNA VAIAMWRNSM VFHSMDKVVS LFIHIMPPVT LHCIVHLTPL DVMKERFPAA 300
  301 YEIKSSEPGS PEHFGLLSMM LWATVPYVIW QLSYHLFITV RRADKIAAGR PTSFTWLRKS 360
  361 YAKAWIGRLV LSLPETLQAP AFMLIQYTYA LLTMIPCPIW LWSRWASGIF ITGLFILSIH 420
  421 NGATYYIDVF GKRFQKELEE LKKDVARWQS SPEGAITPIT PGTTAHAEEK QLNARSSRSN 480
  481 SDNASIEKIP LLDSNGVSTA IEGGTK

Type	Start	End	Confidence
Cytoplasmic	1	161	0.95
Transmembrane Helix	162	179	0.89
Non-Cytoplasmic	180	183	0.76
Transmembrane Helix	184	202	0.66
Cytoplasmic	203	210	0.54
Transmembrane Helix	211	231	0.94
Non-Cytoplasmic	232	236	0.63
Transmembrane Helix	237	257	0.91
Cytoplasmic	258	267	0.62
Transmembrane Helix	268	290	0.72
Non-Cytoplasmic	291	315	0.83
Transmembrane Helix	316	338	0.81
Cytoplasmic	339	364	0.85
Transmembrane Helix	365	387	0.69
Non-Cytoplasmic	388	404	0.61
Transmembrane Helix	405	427	0.84
Cytoplasmic	428	506	0.90