YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67524423, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMETLPTNQT LLEDPSLCTL DTCPLSMASF EYIPKLWAQI LFMALFGLAF VVQLFLGIRY  60
   61 KTYTFMVAMV LGLAGEVVGY GGRVSLHDNP FNDDAFLQYL VSLTIAPAFL TAAIYLTLSR 120
  121 IVVAYGERIS FFKPRTYTIT FITFDFIALL LQAVGGAIAS TADDDDRDMT DLGINIMIAG 180
  181 LAWQVASLLI FIAMSTYFFL RVRKAPGADL NLNFDTLRRS RYFKGSLWGL SIATIVILVR 240
  241 SIFRCAELSE GFDGELANDE VTFMILEAAM IGIAAICLTV FHPGVVWKGQ WNQAVWSTRG 300
  301 KSGKTYAKAS TADGDSEVSL RSMGMQARTA YPETSYQPYN P

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.90
Transmembrane Helix	36	56	0.95
Cytoplasmic	57	62	0.77
Transmembrane Helix	63	84	0.84
Non-Cytoplasmic	85	95	0.91
Transmembrane Helix	96	118	0.87
Cytoplasmic	119	136	0.85
Transmembrane Helix	137	159	0.91
Non-Cytoplasmic	160	178	0.87
Transmembrane Helix	179	200	0.93
Cytoplasmic	201	221	0.95
Transmembrane Helix	222	243	0.90
Non-Cytoplasmic	244	262	0.92
Transmembrane Helix	263	286	0.87
Cytoplasmic	287	341	0.98