YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82659470
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.93
Transmembrane Helix	89	110	0.86
Non-Cytoplasmic	111	116	0.76
Transmembrane Helix	117	137	0.85
Cytoplasmic	138	142	0.78
Transmembrane Helix	143	162	0.82
Non-Cytoplasmic	163	170	0.71
Transmembrane Helix	171	191	0.92
Cytoplasmic	192	198	0.62
Transmembrane Helix	199	219	0.80
Non-Cytoplasmic	220	251	0.84
Transmembrane Helix	252	272	0.86
Cytoplasmic	273	285	0.86
Transmembrane Helix	286	308	0.86
Non-Cytoplasmic	309	379	0.82
Transmembrane Helix	380	400	0.74
Cytoplasmic	401	414	0.76
Transmembrane Helix	415	438	0.86
Non-Cytoplasmic	439	474	0.62
Transmembrane Helix	475	508	0.79
Cytoplasmic	509	827	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGDIPTKVG HGLAKVLRLK LPEKPQPDAV TRGESTFSVG TFDTYSYVEP EPTAAEWFAE  60
   61 ITPSWKEIGL YFYRLFPFLS WITRYNTTWL IGDLVAGITV GAVVVPQGMA YAQLAQLPVE 120
  121 YGLYSSFMGV LIYWFFATSK DITIGPVAVM STLVGNIVTE AAETLPDVEP HVIASCLAVI 180
  181 CGGIVTFMGL ARLGFIVDFI PLPAITAFMT GSAINICSGQ VSTMLGETDK VNTRGATYNT 240
  241 IIQTLRALPS STLDAAMGVT ACAMLYIIRF ACNTAAKKQP HRAKMWFFIS TLRTVFVILF 300
  301 YTMISAATNL HRRDNPAFKV LGTVPRGFKH AAVPTVNAEI IKTFASELPA AVIVLLIEHI 360
  361 AISKSFGRVN NYTIDPSQEL VAIGVTNLLG PFLGGYPATG SFSRTAIKSK AGVRTPLAGV 420
  421 ITAVVVLLAI YALPALFWYI PKASLAGVII HAVGDLITPP NVVYQFYRVS PLDCVIFFVG 480
  481 VIVTVFTSIE IGVYCTVCIS VAVLLFRVAK ARGEFLGRVT IHSVVGDHVL EESKPGLGDA 540
  541 DRTRSIFLPL NHADGSNPEI EIEQPYPGIF IYRFSEGFNY PNANHYTDYL VETIFQKTRR 600
  601 TNPFTYSNPG DRPWNNPGPR KGKQEEDRSH LPTLRAVILD FSSVNNVDVT SVQNLIDVRN 660
  661 QLDIYASPHT VQWHFAHVKN RWTKRALAAA GFGYPTPQSE DGFHRWKPIF SVTEIEGQSS 720
  721 AAAHAEIVAN ENTRQASSHG HDLESGIKNP SHTAERETHG IEESSNSSIG EDDKLQRDLK 780
  781 DSKAYQNRRK MAVVQGVNLP FFHIDITSAL ESALANSQEE PADVSSD