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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40743808, gi|...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWCGYSDAK SSIKIQRLHI VGVSLCWEFA PTTSSPAESP RPQHAMSDTP RLRSAFPSTP  60
   61 QTTQKTRDYN RSPSRPIPRN APRSKVVSQA PSADQDASSS LVPSSIIDPP TQRLYVAAAY 120
  121 VALNAWRFYE AWTASDDLDS TWLFLKWASI DGVFLFGLQA LRIPWLEWAF PTTLALLLVH 180
  181 VAFNIFLMFR IPIPVGIWLS GMMRLAYDRE LSISGQSIKP GDIINNASLI LGKQIINILP 240
  241 EGSAVLNPEL APLCLDAQKT AVELPIRVNQ TDPILIELLR LDFNNGDSEI VTIQSKQLKQ 300
  301 LKRQSDKRRS QLSSELHRDL LLPIRKTGIY RLQRVVDESK LEVRVRASDS IVTACPRALI 360
  361 KNSHTHKCRG ELSNLVLAVE GTPPLKIKYS RQVNDHDRGF SFQNIQPDHL RTPLLGHRSL 420
  421 GRLFDGREPD ITWAKSQIIE IPLNESLNIG GDWLYMIEEV HDGSGNVANY SMVLEDLDRQ 480
  481 SVKSLAQWHH FSVHEIPKLS LSGCNDQQFL EVARGESHPL PVKFHSTDHG YENDGPFSLI 540
  541 YSFGTDGQGS VDDSARTVRQ LSLKSVDQKP MIKEPGWYSL KYVSSQFCSG EILEPSSCYL 600
  601 HNPPEPEISV RSEKIFDKCA NNPVGLLVDL DLTGSPPFRL RYTIETSKGV ETKHQIIDGL 660
  661 RAQLDFTPLE AGHYRYRFLD ISDSVYGPRP LENKVAVLEQ DVKPPASANF VGTPEVRKAC 720
  721 FGEPISVDVA FHGEAPWTLQ YELVHNGKKT RHVLESETAR STIITDNLVS GGGYNLVLTS 780
  781 VKDRSKCKRN LNEILKVDAR SKPPHVSFGL VEKSRKYSAL QGSKVDIPIR LSGERPWTLQ 840
  841 YKNLDADASI STKTFWHENS FLTVSQEGRY ELLGVTDSSC PGSVDDAAKV FEISWIPRPQ 900
  901 ITAVDNTPVG PDGLVAKNDI CQGQGDSLEL RLTGNPPYTI QCEQQRKGSR GSTAVRIRSL 960
  961 KTALHSLSME LETSEPGDYT YRFKEVGDNL YNNDPRGNQV VVTQKVNPLP SARFDAPGRI1020
 1021 YGFCREDDSG DELIPLTMEG VPPFFLEISI KHYAKAKPEI VSIPNIKSNR HNLPIPRRHL1080
 1081 DLGQHVVSIH KVRDARGCEK TYHTDPASVR VAVSDVPTIV PLESKTDYCV GERLSFSLSG1140
 1141 HSPFEVFYTF NGVARRASSQ TNHFRRIAEK PGVFTITAVS DGASGKCKAH KDIVKTIHPM1200
 1201 PSVRISNGQV SIVDIHEGGE AKLEFEFWGT PPFEFTYIRS TNARKGKKAE IIDIKHDISY1260
 1261 EHHKIIKTSD EGTYEVVAIK DKYCSFSTQP SMEKNEKLLT NS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle