YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67525439, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSARSPGAV PSTPRVTSPS PTPSEGRTSS RSRDGYSAPT TRSAARRQQH LGDVTEETTD  60
   61 SSPPRSRRRK SKLKQPTSGE PLVARTNGNA PQKNGFLSPL PKADGTGLVD SVSRSPSPLG 120
  121 LIPLHTRYRT FIHRHEIPRK LLHVSIGFLT LHLYSRGIQT HQITPWLFGA LVPIAATDFL 180
  181 RHRSERVNRL YIRCMGALMR ETEVSGYNGV IWYLVGAYTV LRFFPKDIGV MGVLLLSWCD 240
  241 TAASTFGRLY GRYTFSLRKG KSLAGTFAAW LVGVVTAAAF WGWFVPYIGT FPNDPEDAFL 300
  301 YTGRLNLFPD PVKRLIGWTV TSPDTESGSV ITGPLALGVM SVVSGLVAAG SEFIDFMGWD 360
  361 DNLTIPVLSG IGLWGFLKIF G

Type	Start	End	Confidence
Cytoplasmic	1	136	0.90
Transmembrane Helix	137	155	0.79
Non-Cytoplasmic	156	162	0.76
Transmembrane Helix	163	182	0.90
Cytoplasmic	183	203	0.87
Transmembrane Helix	204	221	0.90
Non-Cytoplasmic	222	227	0.74
Transmembrane Helix	228	250	0.87
Cytoplasmic	251	262	0.89
Transmembrane Helix	263	285	0.90
Non-Cytoplasmic	286	329	0.94
Transmembrane Helix	330	350	0.87
Cytoplasmic	351	361	0.67
Transmembrane Helix	362	380	0.75
Non-Cytoplasmic	381	381	0.77