YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40743672, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIQIPIDA ITSRFGDRFN SLRSQSLGSR FANLRPISEF LDFKRLSKPA NFGEAQSRVN  60
   61 YNLSYFSSNY AAIFVLLSIY SLLTNPLLLF VIFLVSGGLW GIGKLGGRDL DLGFARFNTS 120
  121 QLYTGLLIVA VPLGFWASPI ATFLWLIGAT AGLRGRGDIL RSSVLEHDDR QGSFDGADYD 180
  181 MYEDTNKTVA YAVQLAMEDN EDWLVERALE RIRRAHSEGH KNVTLSNREL EALERRRLQA 240
  241 APDPAESQQV KGSGSDIGAT PASPYPLDTS IYDTWARTST SVSPQSSTTT LRSTHQPAYL 300
  301 SSASRPSVFH APPAIPGSLP DDYQQMPLHQ TAQLSESRHN LHHPIDTQCG SLTRLAKTPY 360
  361 TSARSHALHG SPDLGALAAR FVTNRDSESD ESSPRKRSPA SSGDDIPVME VIKHKVPSSP 420
  421 TRVINRGIRQ RVSRP

Type	Start	End	Confidence
Cytoplasmic	1	69	0.88
Transmembrane Helix	70	103	0.73
Non-Cytoplasmic	104	122	0.63
Transmembrane Helix	123	147	0.86
Cytoplasmic	148	435	0.67