YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40743671, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWIISFWIFP VISACMWIAM LAAMLGTWCV QGYPIYSSME PGQTIAYISD VGAQGLKPLF  60
   61 ITGSVITVVF LDLSFVSERW LRHSGQLVPN KGRFDKFCAI ASIFFSIAGA LGLILLSVYD 120
  121 TLRHSHLHSG FLAMFLVAYL VSAILICIEY LRIGIFYRSQ HRVLLASFAI KAFFIVVEVA 180
  181 LAIAFGICGW HRPHRRNAAA VLEWVIALVF TFYVLSFVVD LLPSVRTRNH VPQGEKRINS 240
  241 AHSDHPEMVY EEPLTQDSAG PNANRNTNYY RGAHV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	55	0.90
Transmembrane Helix	56	76	0.93
Cytoplasmic	77	96	0.93
Transmembrane Helix	97	119	0.93
Non-Cytoplasmic	120	129	0.81
Transmembrane Helix	130	151	0.89
Cytoplasmic	152	167	0.82
Transmembrane Helix	168	190	0.89
Non-Cytoplasmic	191	199	0.84
Transmembrane Helix	200	222	0.88
Cytoplasmic	223	275	0.98