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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49096824, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLFSKRLS CFYCGRRSAQ PGKGPLRKWQ CKHCEAVNYL DENGDITDPP ATETNPDPPT  60
   61 PGPTKSSLES VDIGLTGSDL FCAHALASYF PPSDDPNYSA YEREYPKFRK NLEERYPQVC 120
  121 DQCEPRVKAR IRQAGYEAKS DHLRRMMDRS KAGKAARKAR QWNWRSLLVF AGAICYWASI 180
  181 AGQLAWDLTN ALPVEKSLRD SDGFSMSHVV VPRIRQVLQT LHLPSDGPVD LGPYAGLSLV 240
  241 AGIFSLWYNP KLRLKVEGRG GRFLGLGEYY KVQLIVMVVR CAFWAVLRDP SSSGLDATLP 300
  301 PALHLFMFFF TVLSVIISRR IVCYNTRPLV NWAETTPMTT PVRKTEASPR LTTDTKQPFY 360
  361 TPHEISQQIT PRFPIERLAT PQSAREERAI PTPPPEVDDM DWTPSIQHSF QPASTVHQRD 420
  421 QRQSLLSGPT PFYGSLPPAP VPPSWSLRSQ SSKRPKPIEQ VVERNPFHRS PAQSSADWRR 480
  481 KTASPDAVFA PPKFFPVTDH ASTGLENLFD RAFTIKSPDN DEHDWQRPQQ AHLDTQPSRS 540
  541 ANMRGVFISQ CVRFGLLLVS ITAWSLSQYE LVTVPGDYIE VASLGCASLL AGFALLEGVK 600
  601 QPIVQWNGME LLVYVAELAA AVHLGGYLPG AFLERHYFDR YGKLLLIFMA VQEALGLLAI 660
  661 YQTSLIPDVL SPKRSQAGRP SSSGGDTIAG DSPNSRISRQ SNNQSFNSLS SHAPPALSFG 720
  721 STAAGSSFLT QAHKPELSPQ YQLPLSPHGG SFNGNANRHS FSLNSLKHQE ADASDPDFDR 780
  781 DSDTETTMTT ATATTNNTIR NIRYGRNSTA NEVLFSPRRS ELGPGLGSLS LDDGPSRRMT 840
  841 RSQSQRLQSQ TAAGIRRRGF 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle