YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49096738, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLVAYDVS VGWQHSHHSG LLCDVAVGTN AFSTEKHNQS AASEGSAHRH DSLDEIVEAM  60
   61 RTFTTRCNIL LEPLVELTDF LSTQRSATFA TTRPALTTLF VRILFVTPIW ITLTLPPLYL 120
  121 ITTRRVIMIV GTIILTYHSR TARVCRVILW RSLTIRRICG MITGLSFDLD AGKTHIQSHG 180
  181 HAANIATRRR GDSSGVRFTF IIYENQRRWL GIGWTYSLFP SERAAWTDEH LNPVPSKNEF 240
  241 ELPEVQSGNA KWRWVEGSEW HIDGADDDVS DSKASDGGGW IYYDNKWNDG RRGLDGWDRY 300
  301 TRRRKWCRDA ELVEITPDGK PLDAPSALTQ ALAQDIEQSK TGKPDANADA STVDADSVSL 360
  361 APSTTSSKAR RRRWFGSSSN SKSVSDSKNS SSTSTPPATN NNDSESPGNA KITSSSATST 420
  421 SHNRSSSSLR SVSSRPVSIS RSRRLSGLSG SNSGYNTGSP HGSSTVASDS LSIREKEISD 480
  481 AQDRLDKWGA RATGGTERAE RELGLGDEVN MGLS

Type	Start	End	Confidence
Cytoplasmic	1	94	0.84
Transmembrane Helix	95	114	0.76
Non-Cytoplasmic	115	514	0.71