YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40743587, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSRCSMLA LTAATASAFR DTSPFFLAST SEILSTPAQL KSATTLLDEL STKLGACPSD  60
   61 YYVIASQPGV HSTDFATGKS APRLGARMTG EDEAIRSTMI VNEVVGVLET KQVRDILETQ 120
  121 CGAQTTVIDT SAGSYSTDFG KEPRVVVVTF PSPPLGSERT QQLSDHDGLL FDIVGRLPSK 180
  181 KYTILYLTTP REFEESESPV YTSSNDPYQE AMHMDLKRDY SAHSRSDDTK NSSLFDEYQY 240
  241 FTPGLFMALI AAFFFIAILY VGLSALMSLQ VSYAAFEKDT SSTAQKKQQ

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	240	0.99
Transmembrane Helix	241	263	0.89
Cytoplasmic	264	289	0.90