YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40743564, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRGGGRGG FSGRGGGFGG RGEMGTFMHA CEGEMVCESI NPKIPYFNAP IYLENKTPIG  60
   61 KIDEVLGPIN QVYFTIKPQE GIVATSFKPG DKVYIGGDKL LPIEKYASFC PWESAKAKKA 120
  121 VGARGGGRGG RGGARGGGFR GRGGAPRGRG APRGGSFGFR GGAGAFPCMS MSRRTSAMPA 180
  181 NSSSHSGVSA SADGGQEKQK MLLSSDTGHF SMVRALHLAD LVTELNVMSV FSSLRYCLGD 240
  241 PHDYGAIWAA LGFMPFGLFF DFMDGRIARW RKKSSLMGQE LDSLADLISF GMAPAAAAFA 300
  301 LGIRTPLDHL FLTFFVLCGL TRLARFNVTA AVLPKDKTGK SKYFEGTPIP TTLSIVAVMA 360
  361 YWVSQEWILE DIPLGVAAQG TTLEFHPIVL LFVLHGCLMV SKTLHIPKP

Type	Start	End	Confidence
Cytoplasmic	1	215	0.65
Transmembrane Helix	216	231	0.42
Non-Cytoplasmic	232	243	0.77
Transmembrane Helix	244	263	0.94
Cytoplasmic	264	282	0.92
Transmembrane Helix	283	303	0.93
Non-Cytoplasmic	304	308	0.84
Transmembrane Helix	309	326	0.93
Cytoplasmic	327	342	0.82
Transmembrane Helix	343	364	0.87
Non-Cytoplasmic	365	382	0.87
Transmembrane Helix	383	404	0.85
Cytoplasmic	405	409	0.82