YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49095778, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGGRMICI FTPYVLTIAA LICLIVVGLG STDNGTDSLR DLYFFRADLQ DLNSSAPIQN  60
   61 SVSSVLDDLN ISVDDGDLGS ALEEVEQYFN IPDFYNIGLF GYCQGNVTNN NDYRVTNCSS 120
  121 PEAQFWFDPV EVWNLKTLGL QNAIPDDLQD ALNVYKNVSK WMCIAYIIAF AATGLEILLG 180
  181 ITAIFSRWGS CVTTLVAIAA FLFTAAASAT STAMFAVIAG VFNDKIKPYG IDGHMGRNIY 240
  241 AATWLATAFS LAAALFWAIS SCCCSGRSPY NHRHGRNRGG ITAEKAPYTY EPVGEGYPSP 300
  301 QPPFHASAPN YSAQQRPTAY EPYRHV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.78
Transmembrane Helix	10	30	0.93
Non-Cytoplasmic	31	161	0.90
Transmembrane Helix	162	185	0.89
Cytoplasmic	186	194	0.65
Transmembrane Helix	195	219	0.86
Non-Cytoplasmic	220	239	0.84
Transmembrane Helix	240	264	0.85
Cytoplasmic	265	326	0.89