YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49095654, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSTGSVTI ESYLDTAVSS ATPSEETALL RDRKRRHSFH TARKLSCDYD ADAIFLRVEL  60
   61 FLAELERRLH WIEQYRKSHM VQIDTSLRRA YATLEAVRDS CSHASGELMG SGKKRAKILV 120
  121 ETLESRYNDA LATKETLEQK AQAGVRLMES FLTELESRAD AVRDRGVYGA LDDGWKAVDS 180
  181 TLVQAREVMD EGIERARQVK DALRENIDHA IMLAKEKRLI SYSDLPAPWR INPHILSGYR 240
  241 FHSSKVECLT SVFTFSNELV NIWSHLIGLI IVLSIAFYFY PLNPNFHLST NSDTLVAAVF 300
  301 FFAACKCLVC STLWHTMNSI ADQPLMERFA CVDYTGISLL VAASIVTTEY TAFYCEPTSR 360
  361 WVYILLTMSL GIGGVILPWH PTFNRADWAW VRVAFYVTLA LTGFAPLAQL TYARGFSWCL 420
  421 YFYAPVMKSI LVYFVGACVY ASQIPERWKP GLFDYIGGSH NIWHLAVLGG ILFHYLAMQD 480
  481 LFANAFQRAK GECPNLTS

Type	Start	End	Confidence
Cytoplasmic	1	260	0.79
Transmembrane Helix	261	282	0.91
Non-Cytoplasmic	283	293	0.75
Transmembrane Helix	294	316	0.89
Cytoplasmic	317	329	0.72
Transmembrane Helix	330	353	0.82
Non-Cytoplasmic	354	360	0.69
Transmembrane Helix	361	381	0.94
Cytoplasmic	382	387	0.71
Transmembrane Helix	388	412	0.84
Non-Cytoplasmic	413	419	0.69
Transmembrane Helix	420	442	0.85
Cytoplasmic	443	459	0.61
Transmembrane Helix	460	478	0.90
Non-Cytoplasmic	479	498	0.72