YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40743112, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPATTADTLS LVTRTVTVAP LVLLSVADHY GRSAKGTRKR VVGVLLGEHI GGNVRVSNSF  60
   61 AVPFEEDEKD PSVWFLDHNF VESMRDMFKK INAREKLIGW YHSGPKLRAS DLEINELFKR 120
  121 YTPNPLLVIV DVQPKEVGVP TDAYFAVDEI KDVGTTAPQP RHTLTLEAEE IGVEHLLRDI 180
  181 RDVAVGTLST RITSQLQSLQ GLHLRLRDIG QYLQKVLDHE LPVNHAILGN LQDVFNLLPN 240
  241 LSTPSTTARV GGEPEQSTDN AELARAMSIK TNDQLMAIYL SSLVRAVTAY HDLIENKIQN 300
  301 RQQQEEVEQK REQEANSAKN EKEGAKKVTN TSEPKEESKE KTKR

Type	Start	End	Confidence
Signal Peptide	1	27	0.49
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	344	0.97